OK, so part of what is happening here is that the cloud layers at 2200 and 4600 feet are intersecting. Volumetric cloud layers cannot intersect, so we discarded one of them. However I think discarding the lower one is a poor choice, so I'm going to change that for the next build I do (that may not be the next release though, as I've already handed off a couple of bug-fix releases to X-Aviation)
So the remaining issue is the layer at 4600 feet appearing to start closer to 5600 feet for you. That's at least partially a bug where we were applying a correction intended for non-volumetric clouds to the volumetric layer, and I've fixed that too.