The flaps do not have preset stops. They are continuous. If you press and HOLD the flaps actuator, they will continue to deploy until you release the actuator. You can read about the flaps and flaps indicator on page 22 of the manual. If you are using a Saitek Multi Panel to actuate your flaps (or some other hardware) you can set up the flaps to stop at preset stops. Rebooting will not do anything to help with the flaps. Let me know if you want to set up presets and I can tell you how to do it.