I figured it out!
So, Apparently there is an x-plane bug that affects me. I cannot re-enter VR in X-plane after having been in VR during the same session. So, If I go from 3D -> 2D ->3D , then I get a CTD 100% of the time, regardless of which aircraft I use, or when I enter VR the second time. So, I've been starting up X-plane in VR from the get go, as this has worked on all other aircraft, and just stayed in VR the entire time. With the CL650, I tried to start using 2D mode, but for whatever reason it always tries to start X-plane in VR mode (initializing VR) on the first load screen, even when selecting 2d mode from the Steam Launch options. Even if my googles where powered off, and it failed to enter VR, and defaulted to 2d, it apparently "burned" my one shot of getting into VR for that session. So when I tried to enter VR after having entered the CL650 cockpit, it CTDed.
So, then I figured I hade to double check everything, and really make sure x-plane did not try and initialize VR until I was in the cockpit.
So, this is what I did:
1. Enter X-plane, ensure VR is off in the settings.
2. Quit Xplane.
3. Quit Steam just to make sure that any part of SteamVR services are not "lingering" in the system.
4. Start X-plane from the .exe file
5. X-plane now starts in 2d mode, and does not try and initialize VR.
6. Get in the CL650 cockpit in 2d mode.
7. Enable VR mode from the settings menu, and presto, CL650 in glorious 3d VR!
Thanks to all that have helped, and hopefully this post might help others who might have the same issue!
Now, I just need to remember to turn off VR mode in X-plane settings each time I quit to avoid having to do points 1. and 2. above every time I want to fly the CL650. And I hope HotStart can make the entire experience compatible with VR, (FBO/Career/Non-persistent selection menu etc. etc.) compatible with VR so I can stay in VR from the start, and never needing to be in 2d mode.