Installing 12.08b1 I see some strange interaction between the fuel-tanks and the engines,too.
After some try-and-error I re-installed the Mu-2-module and tested with the 4- and 5-blade-OEM-version. Lua-scripts or alternative acf-files to manage fuel and passengers were not installed / used.
I started with 100% in main-tank #3, empty wing-tanks #2 and #4 and 100% in tip-tanks #1 and #5. What's strange:
a) the engines get the fuel from the tip-tanks #1 and #5, later the right-hand engine switches to tank #4. The correct and only option should be the main tank #3.
b) the "auto"-option for the fuel-transfer immediately starts to balance the level of fuel between tanks #1 and #2 and #5 and #4, resp. That's strange, too, since there should be no way to transfer fuel that way. From all wing-tanks it's just one-way into tank #3. Tank #3 get some fuel from the wing-tanks, too. Sadly on top of the already 100% in the tank.
This pic was made during early climb. tanks #1 and #5 are balancing with their #2 and #4. Main tank #3 get's fuel from the wing-tanks, too, beyond it's capacity already. Engines get fuel from their tip-tanks.
Some minutes later #1 / #2 and #4 /#5 are balanced. tank #3 is completely overloaded and engine 2 switched from tip-tank to the wing-tank #4.
As soon as the (auto-balanced) pairs of wing-tanks are empty, the engines shut down. Main-tank isn't used and remains overloaded. One can cheat and "re-fuel" the tip-tanks in flight. Given the real-world manual it's possible to start the engines in flight. I wasn't able to re-start before my altitude was gone. It's quite a few steps, with some proper training it should be possible.
It would be kind if my findings could be checked and confirmed by others? Thanks in advance, Ulrich